Browsing by Author "Tuchin, Valery V."
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- Broadband spectral verification of optical clearing reversibility in lung tissuePublication . Oliveira, Luís R.; Ferreira, Ricardo M.; Pinheiro, Maria R.; Silva, Hugo F.; Tuchin, Valery V.; Oliveira, Luís M.The increase of tissue transparency through sequential optical immersion clearing treatments and treatment reversibility have high interest for clinical applications. To evaluate the clearing reversibility in a broad spectral range and the magnitude of the transparency created by a second treatment, the present study consisted on measuring the spectral collimated transmittance of lung tissues during a sequence of two treatments with electronic cigarette (e-cig) fluid, which was intercalated with an immersion in saline. The saline immersion clearly reverted the clearing effect in the lung tissue in the spectral range between 220 and 1000 nm. By a later application of a second treatment with the e-cig fluid, the magnitude of the optical clearing effect was observed to be about the double as the one observed in the first treatment, showing that the molecules of the optical clearing agent might have converted some bound water into mobile water during the first treatment.
- Broadband spectral verification of optical clearing reversibility in lung tissuePublication . Oliveira, Luís R.; Ferreira, Ricardo M.; Pinheiro, Maria R.; Silva, Hugo F.; Tuchin, Valery V.; Oliveira, LuísThe increase of tissue transparency through sequential optical immersion clearing treatments and treatment reversibility have high interest for clinical applications. To evaluate the clearing reversibility in a broad spectral range and the magnitude of the transparency created by a second treatment, the present study consisted on measuring the spectral collimated transmittance of lung tissues during a sequence of two treatments with electronic cigarette (e-cig) fluid, which was intercalated with an immersion in saline. The saline immersion clearly reverted the clearing effect in the lung tissue in the spectral range between 220 and 1000 nm. By a later application of a second treatment with the e-cig fluid, the magnitude of the optical clearing effect was observed to be about the double as the one observed in the first treatment, showing that the molecules of the optical clearing agent might have converted some bound water into mobile water during the first treatment.
- Diffuse reflectance and machine learning techniques to differentiate colorectal cancer ex vivoPublication . Fernandes, Luís; Carvalho, Sónia; Carneiro, Isa; Henrique, Rui; Tuchin, Valery V.; Oliveira, Hélder P.; Oliveira, LuísIn this study, we used machine learning techniques to reconstruct the wavelength dependence of the absorption coefficient of human normal and pathological colorectal mucosa tissues. Using only diffuse reflectance spectra from the ex vivo mucosa tissues as input to algorithms, several approaches were tried before obtaining good matching between the generated absorption coefficients and the ones previously calculated for the mucosa tissues from invasive experimental spectral measurements. Considering the optimized match for the results generated with the multilayer perceptron regression method, we were able to identify differentiated accumulation of lipofuscin in the absorption coefficient spectra of both mucosa tissues as we have done before with the corresponding results calculated directly from invasive measurements. Considering the random forest regressor algorithm, the estimated absorption coefficient spectra almost matched the ones previously calculated. By subtracting the absorption of lipofuscin from these spectra, we obtained similar hemoglobin ratios at 410/550 nm: 18.9-fold/9.3-fold for the healthy mucosa and 46.6-fold/24.2-fold for the pathological mucosa, while from direct calculations, those ratios were 19.7-fold/10.1-fold for the healthy mucosa and 33.1-fold/17.3-fold for the pathological mucosa. The higher values obtained in this study indicate a higher blood content in the pathological samples used to measure the diffuse reflectance spectra. In light of such accuracy and sensibility to the presence of hidden absorbers, with a different accumulation between healthy and pathological tissues, good perspectives become available to develop minimally invasive spectroscopy methods for in vivo early detection and monitoring of colorectal cancer.The application of machine learning methods to noninvasivelike diffuse reflectance spectra allowed us to reconstruct the absorption coefficient spectra of human healthy and pathological mucosa tissues from the colorectal wall. Consequently, we were able to obtain differentiated blood and pigment content in both tissues, which can be used for the development of new noninvasive diagnostic methods for colorectal cancer.
- Diffusion characteristics of ethylene glycol in skeletal musclePublication . Oliveira, Luís M.; Carvalho, Maria Inês; Nogueira, Elisabete M.; Tuchin, Valery V.Part of the optical clearing study in biological tissues concerns the determination of the diffusion characteristics of water and optical clearing agents in the subject tissue. Such information is sufficient to characterize the time dependence of the optical clearing mechanisms—tissue dehydration and refractive index (RI) matching. We have used a simple method based on collimated optical transmittance measurements made from muscle samples under treatment with aqueous solutions containing different concentrations of ethylene glycol (EG), to determine the diffusion time values of water and EG in skeletal muscle. By representing the estimated mean diffusion time values from each treatment as a function of agent concentration in solution, we could identify the real diffusion times for water and agent. These values allowed for the calculation of the correspondent diffusion coefficients for those fluids. With these results, we have demonstrated that the dehydration mechanism is the one that dominates optical clearing in the first minute of treatment, while the RI matching takes over the optical clearing operations after that and remains for a longer time of treatment up to about 10 min, as we could see for EG and thin tissue samples of 0.5 mm.
- Enhanced Ultraviolet Spectroscopy by Optical Clearing for Biomedical ApplicationsPublication . Carneiro, Isa; Carvalho, Sonia; Henrique, Rui; Selifonov, Alexey; Oliveira, Luís; Tuchin, Valery V.In this paper, we describe the combination of ultraviolet (UV) spectroscopy with the optical clearing technique to induce new tissue windows, evaluate their efficiency, study the diffusion properties of agents and discriminate cancer. The use of highly concentrated glycerol solutions has induced high efficiency clearing effects in the UV, both in human colorectal and gingival tissues. The protein dissociation rate obtained for colorectal tissues was approximately 3 times higher in pathological than in normal mucosa and the kinetics of diffuse reflectance in the UV allowed to estimate the diffusion coefficient for water in gingival mucosa at glycerol action as (1.78 ± 0.26) × 10 -6 cm 2 /s.
- Fast calculation of spectral optical properties and pigment content detection in human normal and pathological kidneyPublication . Botelho, Ana R.; Silva, Hugo F.; Martins, Inês S.; Carneiro, Isa; Carvalho, Sónia D.; Henrique, Rui M.; Tuchin, Valery V.; Oliveira, Luís M.A fast calculation method was used to obtain the spectral optical properties of human normal and pathological (chromophobe renal cell carcinoma) kidney tissues. Using total transmittance, total reflectance and collimated transmittance spectra acquired from ex vivo kidney samples, the spectral optical properties of both tissues, namely the absorption, the scattering and the reduced scattering coefficients, as well as the scattering anisotropy, dispersion and light penetration depth, were calculated between 200 and 1000 nm. Analysis of the mean ab sorption coefficient spectra of the kidney tissues showed that both contain melanin and lipofuscin, and that 83 % of the melanin in the normal kidney converts into lipofuscin in the pathological kidney.
- Kinetics of Optical Properties of Colorectal Muscle During Optical ClearingPublication . Carneiro, Isa; Carvalho, Sonia; Henrique, Rui; Oliveira, Luís; Tuchin, Valery V.In this paper, we describe a simple and indirect method to evaluate the kinetics of the optical properties for biological tissues under optical clearing treatments. We use the theoretical formalism in this method to process experimental data obtained from colorectal muscle samples to evaluate and characterize the dehydration and refractive index matching mechanisms.
- Kinetics of optical properties of human colorectal tissues during optical clearing: a comparative study between normal and pathological tissuesPublication . Carneiro, Isa; Carvalho, Sónia; Silva, Vânia; Henrique, Rui; Oliveira, Luís; Tuchin, Valery V.To characterize the optical clearing treatments in human colorectal tissues and possibly to differentiate between treatments of normal and pathological tissues, we have used a simple indirect method derived from Mie scattering theory to estimate the kinetics of the reduced scattering coefficient. A complementary method to estimate the kinetics of the scattering coefficient is also used so that the kinetics of the anisotropy factor and of the refractive index are also calculated. Both methods rely only on the thickness and collimated transmittance measurements made during treatment. The results indicate the expected time dependencies for the optical properties of both tissues: an increase in the refractive index and anisotropy factor and a decrease in the scattering coefficients. The similarity in the kinetics obtained for normal and pathological tissues indicates that optical clearing treatments can be applied also in pathological tissues to produce similar effects. The estimated time dependencies using experimental spectral data in the range from 400 to 1000 nm allowed us to compare the kinetics of the optical properties between different wavelengths.
- Measurement of optical properties of normal and pathological human liver tissue from deep-UV to NIRPublication . Carneiro, Isa; Carvalho, Sónia; Henrique, Rui; Oliveira, Luís; Tuchin, Valery V.The interest of using light in clinical practice is increasing strongly and many applications work at various wavelengths from the ultraviolet to the infrared. Due to this great range of applications, the determination of the optical properties of biological tissues in a wide spectral range becomes of interest. The liver is an important organ, since it has a major role in the human body and various pathologies are known to develop within it. For these reasons, this study concerns the estimation of the optical properties of human normal and pathological (metastatic carcinoma) liver tissues between 200 and 1000 nm. The obtained optical properties present the expected wavelength dependencies for both tissues – the refractive index, the absorption and the scattering coefficients decrease with the wavelength and the anisotropy and light penetration depth increase with the wavelength. Although similar behavior was observed for the various properties between the normal and pathological tissues, evidence of smaller blood content in the pathological tissues was found. A possible explanation is that the cancer cells destroy liver’s vasculature and internal architecture, providing though a reduction in the blood content. For low wavelengths, it was observed a matching between the scattering and the reduced scattering coefficients, which implies a nearly zero anisotropy in that range. The scattering coefficient decreases from nearly 140 cm-1 (at 200 nm) to 80 cm-1 (at 1000 nm) for the normal liver and from nearly 140 cm-1 (at 200 nm) to 95 cm-1 (at 1000 nm) for the pathological tissue.
- Optical characterization of musclePublication . Oliveira, Luís; Lage, Armindo; Clemente, Manuel Pais; Tuchin, Valery V.Optical characterization and internal structure of biological tissues is highly important for biomedical optics. In particular for optical clearing processes, such information is of vital importance to understand the mechanisms involved through the variation of the refractive indices of tissue components. The skeletal muscle presents a fibrous structure with an internal arrangement of muscle fiber cords surrounded by interstitial fluid that is responsible for strong light scattering. To determine the refractive index of muscle components we have used a simple method of measuring tissue mass and refractive index during dehydration. After performing measurements for natural and ten dehydration states of the muscle samples, we have determined the dependence between the refractive index of the muscle and its water content. Also, we have joined our measurements with some values reported in literature to perform some calculations that have permitted to determine the refractive index of the dried muscle fibers and their corresponding volume percentage inside the natural muscle.
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