Browsing by Author "Freitas, Alberto"
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- Adult asthma scores—development and validation of multivariable scores to identify asthma in surveysPublication . Sá-Sousa, Ana; Pereira, Ana Margarida; Almeida, Rute; Araújo, Luís; Couto, Mariana; Jacinto, Tiago; Freitas, Alberto; Bousquet, Jean; Fonseca, João A.One of the questions in epidemiology is the identification of adult asthma in studies. To develop and validate multivariable scores for adult asthma identification in epidemiological studies and to explore cutoffs to rule in/rule out asthma, compared with asthma diagnosed by a physician after clinical examination and diagnostic tests, blinded to the self-administered questions. We analyzed data (n = 711 adults) from a nationwide population-based study. The predictors were self-administered questions identified in a literature review (the Adult Asthma Epidemiological Score [A2 score]) and from the Global Allergy and Asthma Network of Excellence (GA2LEN) questionnaire (the GA2LEN Asthma Epidemiological Score [GA2LEN score]). Scores were developed using exploratory factor analysis. Internal consistency, discriminative power, and diagnostic accuracy were assessed. The A2 score comprises 8 questions (including “Did a physician confirm you had asthma?”) and the GA2LEN score comprises 6 questions (including “Have you ever had asthma?”). Both had high Cronbach α (0.89 and 0.85, respectively, for the A2 score and the GA2LEN score) and good area under the receiver-operating characteristic curve (90.4% and 89.0%). The scoring is the sum of positive answers. Asthma is present (rule in) for scores of 4 or more (specificity, 99.2%; PPV, 93.3% and 91.7%; accuracy, 89.4% and 87.4%, respectively, for the A2 score and the GA2LEN score). Asthma is excluded (rule out) for A2 scores of 0 to 1 and a GA2LEN score of 0 (sensitivity, 93.1%; NPV, 98.2% and 98.0%; accuracy 89.4% and 82.8%, respectively, for the A2 score and the GA2LEN score). These practical scores can be used to rule in/rule out asthma in epidemiological studies and clinical screening/triage settings. They may help physicians in primary care or other specialties to screen patients with asthma using a simple score with a high level of discrimination and to identify the best candidates to be referred for a diagnostic workup. Moreover, their use may contribute to reducing the inconsistencies of operational definitions of asthma across studies and surveys.
- AIRDOC: Smart mobile application for individualized support and monitoring of respiratory function and sounds of patients with chronic osbtructive diseasePublication . Almeida, Rute; Amaral, Rita; Jácome, Cristina; Martinho, Diogo; Vieira-Marques, Pedro; Jacinto, Tiago; Ferreira, Ana; Almeida, Ana; Martins, Constantino; Pereira, Mariana; Pereira, Ana; Valente, José; Almeida, Rafael; Vieira, Ana; Amaral, Rita; Sá-Sousa, Ana; Gonçalves, Ivânia; Rodrigues, Pedro; Alves-Correia, Magna; Freitas, Alberto; Marreiros, GoretiCurrent tools for self-management of chronic obstructive respiratory diseases (CORD) are difficult to use, not individualized and requiring laborious analysis by health professionals, discouraging their use in healthcare. There is an opportunity for cost-effective and easy-to-disseminate advanced technological solutions directed to patients and attractive to different stakeholders. The strategy of AIRDOC is to develop and integrate self-monitoring and self-managing tools, making use of the smartphone's presence in everyday life. AIRDOC intends to innovate on: i) technologies for remote monitoring of respiratory function and computerized lung auscultation; ii) coaching solutions, integrating psychoeducation, gamification and disease management support systems; and iii) management of personal health data, focusing on security, privacy and interoperability. It is expected that AIRDOC results will contribute for the innovation in CORD healthcare, with increased patient involvement and empowerment while providing quality prospective information for better clinical decisions, allowing more efficient and sustainable healthcare delivery.
- Applying Data Mining Techniques to Improve Breast Cancer DiagnosisPublication . Diz, Joana; Marreiros, Goreti; Freitas, AlbertoIn the field of breast cancer research, and more than ever, new computer aided diagnosis based systems have been developed aiming to reduce diagnostic tests false-positives. Within this work, we present a data mining based approach which might support oncologists in the process of breast cancer classification and diagnosis. The present study aims to compare two breast cancer datasets and find the best methods in predicting benign/malignant lesions, breast density classification, and even for finding identification (mass / microcalcification distinction). To carry out these tasks, two matrices of texture features extraction were implemented using Matlab, and classified using data mining algorithms, on WEKA. Results revealed good percentages of accuracy for each class: 89.3 to 64.7 % - benign/malignant; 75.8 to 78.3 % - dense/fatty tissue; 71.0 to 83.1 % - finding identification. Among the different tests classifiers, Naive Bayes was the best to identify masses texture, and Random Forests was the first or second best classifier for the majority of tested groups.
- Data-driven prescription patterns in patients under maintenance treatment for respiratory diseases from the Portuguese prescription databasePublication . Sá-Sousa, Ana; Amaral, Rita; Almeida, Rute; Freitas, Alberto; Fonseca, João AWe aimed to identify prescription patterns in respiratory patients using an unsupervised (data-driven) method, in a random sample of patients aged >14 years (n=8799), retrieved from the Portuguese Electronic Medical Prescription database. Respiratory patients were defined if >2 packs of maintenance treatment for respiratory diseases were prescribed in 2016. We analysed all the prescriptions (n=39810) for respiratory diseases and exacerbations by medication type. Two-step clustering was based on the presence of ICS, LABA, LTRA, LAMA, LABA, SABA, SAMA and on the speciality of prescriber.
- Multidisciplinary development and initial validation of a clinical knowledge base on chronic respiratory diseases for mHealth decision support systemsPublication . Pereira, Ana Margarida; Jácome, Cristina; Jacinto, Tiago; Amaral, Rita; Pereira, Mariana; Sá-Sousa, Ana; Couto, Mariana; Vieira-Marques, Pedro; Martinho, Diogo; Vieira, Ana; Almeida, Ana; Martins, Constantino; Marreiros, Goreti; Freitas, Alberto; Almeida, Rute; Fonseca, João A.Most mobile health (mHealth) decision support systems currently available for chronic obstructive respiratory diseases (CORDs) are not supported by clinical evidence or lack clinical validation. The development of the knowledge base that will feed the clinical decision support system is a crucial step that involves the collection and systematization of clinical knowledge from relevant scientific sources and its representation in a human-understandable and computer-interpretable way. This work describes the development and initial validation of a clinical knowledge base that can be integrated into mHealth decision support systems developed for patients with CORDs. A multidisciplinary team of health care professionals with clinical experience in respiratory diseases, together with data science and IT professionals, defined a new framework that can be used in other evidence-based systems. The knowledge base development began with a thorough review of the relevant scientific sources (eg, disease guidelines) to identify the recommendations to be implemented in the decision support system based on a consensus process. Recommendations were selected according to predefined inclusion criteria: (1) applicable to individuals with CORDs or to prevent CORDs, (2) directed toward patient self-management, (3) targeting adults, and (4) within the scope of the knowledge domains and subdomains defined. Then, the selected recommendations were prioritized according to (1) a harmonized level of evidence (reconciled from different sources); (2) the scope of the source document (international was preferred); (3) the entity that issued the source document; (4) the operability of the recommendation; and (5) health care professionals’ perceptions of the relevance, potential impact, and reach of the recommendation. A total of 358 recommendations were selected. Next, the variables required to trigger those recommendations were defined (n=116) and operationalized into logical rules using Boolean logical operators (n=405). Finally, the knowledge base was implemented in an intelligent individualized coaching component and pretested with an asthma use case. Initial validation of the knowledge base was conducted internally using data from a population-based observational study of individuals with or without asthma or rhinitis. External validation of the appropriateness of the recommendations with the highest priority level was conducted independently by 4 physicians. In addition, a strategy for knowledge base updates, including an easy-to-use rules editor, was defined. Using this process, based on consensus and iterative improvement, we developed and conducted preliminary validation of a clinical knowledge base for CORDs that translates disease guidelines into personalized patient recommendations. The knowledge base can be used as part of mHealth decision support systems. This process could be replicated in other clinical areas.
- Problemas de qualidade de dados em internamentos hospitalares e possíveis implicaçõesPublication . Costa, Tiago; Marques, Bernardo; Oliveira, Paulo; Freitas, AlbertoNos dias de hoje, com a informatização dos sistemas de informação, as organizações, a nível mundial, são capazes de armazenar todo o tipo de informação por elas gerada. Esta informação é cada vez mais complexa, podendo conter dados de produção, de consumo, de facturação, etc. Sem desprezar o resto da informação produzida, pode dizer-se que os dados administrativos assumem uma relevância especial na gestão dessas organizações. É sobre estes dados que as organizações baseiam todas as tomadas de decisão que definem o seu futuro num ambiente competitivo. Associados a toda a complexidade da informação gerada, estão os problemas de qualidade de dados, muitas vezes desprezados, mas que podem influenciar negativamente as medidas adoptadas e os objectivos traçados. Este capítulo procura, acima de tudo, chamar a atenção para este tipo de problemas, referenciando algumas das suas implicações no âmbito hospitalar. Como resultado, este capítulo apresenta uma sistematização dos vários erros possíveis de constar neste tipo de bases de dados administrativas, contribuindo com alguns exemplos encontrados durante um estudo de qualidade de dados.
- Quality in Hospital Administrative DatabasesPublication . Freitas, Alberto; Gaspar, Juliano; Rocha, Nuno; Marreiros, Goreti; Costa-Pereira, AltamiroThe clinical content of administrative databases includes, among others, patient demographic characteristics, and codes for diagnoses and procedures. The data in these databases is standardized, clearly defined, readily available, less expensive than collected by other means, and normally covers hospitalizations in entire geographic areas. Although with some limitations, this data is often used to evaluate the quality of healthcare. Under these circumstances, the quality of the data, for instance, errors, or it completeness, is of central importance and should never be ignored. Both the minimization of data quality problems and a deep knowledge about this data (e.g., how to select a patient group) are important for users in order to trust and to correctly interpret results. In this paper we present, discuss and give some recommendations for some problems found in these administrative databases. We also present a simple tool that can be used to screen the quality of data through the use of domain specific data quality indicators. These indicators can significantly contribute to better data, to give steps towards a continuous increase of data quality and, certainly, to better informed decision-making.