Publication
Shannon, rényie and tsallis entropy analysis of DNA using phase plane
| dc.contributor.author | Costa, António Cardoso | |
| dc.contributor.author | Machado, J. A. Tenreiro | |
| dc.contributor.author | Quelhas, Dulce | |
| dc.date.accessioned | 2013-04-22T14:40:32Z | |
| dc.date.available | 2013-04-22T14:40:32Z | |
| dc.date.issued | 2011 | |
| dc.description.abstract | This paper analyzes DNA information using entropy and phase plane concepts. First, the DNA code is converted into a numerical format by means of histograms that capture DNA sequence length ranging from one up to ten bases. This strategy measures dynamical evolutions from 4 up to 410 signal states. The resulting histograms are analyzed using three distinct entropy formulations namely the Shannon, Rényie and Tsallis definitions. Charts of entropy versus sequence length are applied to a set of twenty four species, characterizing 486 chromosomes. The information is synthesized and visualized by adapting phase plane concepts leading to a categorical representation of chromosomes and species. | por |
| dc.identifier.doi | 10.1016/j.nonrwa.2011.05.013 | pt_PT |
| dc.identifier.issn | 1468-1218 | |
| dc.identifier.uri | http://hdl.handle.net/10400.22/1453 | |
| dc.language.iso | eng | por |
| dc.peerreviewed | yes | por |
| dc.publisher | Elsevier | por |
| dc.relation.ispartofseries | Nonlinear Analysis: Real World Applications; Vol. 12, Issue 6 | |
| dc.relation.publisherversion | http://www.sciencedirect.com/science/article/pii/S1468121811001088 | por |
| dc.subject | DNA | por |
| dc.subject | Chromosome | por |
| dc.subject | Entropy | por |
| dc.subject | Phase plane | por |
| dc.title | Shannon, rényie and tsallis entropy analysis of DNA using phase plane | por |
| dc.type | journal article | |
| dspace.entity.type | Publication | |
| oaire.citation.endPage | 3144 | por |
| oaire.citation.issue | Issue 6 | |
| oaire.citation.startPage | 3135 | por |
| oaire.citation.title | Nonlinear Analysis: Real World Applications | |
| oaire.citation.volume | Vol. 12 | |
| person.familyName | Tenreiro Machado | |
| person.givenName | J. A. | |
| person.identifier.ciencia-id | 7A18-4935-5B29 | |
| person.identifier.orcid | 0000-0003-4274-4879 | |
| person.identifier.rid | M-2173-2013 | |
| person.identifier.scopus-author-id | 55989030100 | |
| rcaap.rights | restrictedAccess | por |
| rcaap.type | article | por |
| relation.isAuthorOfPublication | 82cd5c17-07b6-492b-b3e3-ecebdad1254f | |
| relation.isAuthorOfPublication.latestForDiscovery | 82cd5c17-07b6-492b-b3e3-ecebdad1254f |